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Boutique hotel vacation rentals in Shinjuku City

Find and book unique boutique hotel rentals on Airbnb

Top-rated boutique hotel rentals in Shinjuku City

Guests agree: these boutique hotel rentals are highly rated for location, cleanliness, and more.

Guest favorite
Boutique hotel in Toshima City
" Ryū No Ma " at Sunpika「龍の間」 2022年春オープンの小さなアート宿
SUNPIKA is a new wooden building with only three rooms designed by the team of architects.Unlike the reinforced structure, there is a sound, so it would be helpful if you could take care of the loud footsteps and floor noise from the lower rooms at night. Please take off your shoes and "sandals" on the top of the tatami mats in each room in each room, please take off your shoes and use them.Shoes are fine in front of the tatami mat. It is a unique and one-of-a-kind inn with the theme of “dreamy” painted in mural paintings by artist Kayoshi Kuroda.From the performance of "Dream Noh", which is set in the dream of a traveler, to the stage of the inn, which depicts SUNPIKA's unique world view, from the idea that you want to enjoy the continuation of the journey in your dream, we hope that you will be healed in the world of illusion by composing the motifs and adults of the natural world that inhabit this place from "ancient times".There are detailed art explanations on SUNPIKA's homepage. 4 minutes by walk from Otsuka Station on the JR Yamanote line * The room is private & self check in and out. * JR train to Shinjuku 10min/Shibuya 18min
Jul 8 – 15
$85 per night
4.96 out of 5 average rating, 128 reviews
Guest favorite
Hotel room in Taitō-ku
The Hideout Tokyo -(Double Room)-
We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government
Jun 24 – Jul 1
$100 per night
4.91 out of 5 average rating, 328 reviews
Superhost
Boutique hotel in Setagaya-ku
illi Shimokitazawa 301 | 1 min from Shimokitazawa
Located only a minute walk from Shimokitazawa Station, this stunning room has been meticulously designed to become your exclusive nook to escape from Tokyo’s hustle and bustle. Your home away from home flows over the entire floor of the building- giving you exclusive access to your own stylish apartment and private balcony. Stay here to experience the hip neighborhood of Shimokita- Tokyo’s bohemian hub for vintage clothing, vinyl records, music venues, theaters, cafes, bars and restaurants…
Aug 19 – 26
$535 per night
4.94 out of 5 average rating, 133 reviews

Popular amenities for Shinjuku City boutique hotel rentals

Family-friendly boutique hotels rentals

Superhost
Boutique hotel in 墨田区石原
4beds in Tokyo/3min. from the station : Studio B
Jan 29 – Feb 5
$225 per night
4.83 out of 5 average rating, 554 reviews
Boutique hotel in 中央区
【Ginza/Tokyo area】 Junior Suite (Free Wi-Fi)
Apr 22 – 29
$259 per night
4.78 out of 5 average rating, 798 reviews
Boutique hotel in Koto
Direct to Shinjuku, Shibuya, 2-min to Subway, 2F
Jul 23 – 30
$167 per night
4.59 out of 5 average rating, 68 reviews
Guest favorite
Boutique hotel in 墨田区石原
4beds in Tokyo/3mintes from Station : Studio A
May 6 – 13
$219 per night
4.92 out of 5 average rating, 95 reviews
Boutique hotel in Koto City
Direct to Shinjuku, Shibuya, 2min to Subway, 3F
Oct 7 – 14
$167 per night
4.63 out of 5 average rating, 32 reviews
Boutique hotel in Koto City
Direct to Shinjuku, Shibuya, 2 min to Subway 201
Jun 24 – Jul 1
$86 per night
4.37 out of 5 average rating, 49 reviews

Monthly boutique hotels rentals

Superhost
Boutique hotel in Kawasaki-shi
A hotel full of Japanese culture and character
May 3 – 31
$1,043 per month
4.81 out of 5 average rating, 64 reviews
Boutique hotel in Shibuya City
The Standard Apartment, Shibuya-ku, Sasazuka C Room Stylish Instagram Hotel Garden Entrance Staircase is also great for shooting
Oct 2 – 30
$934 per month
4.57 out of 5 average rating, 21 reviews
Superhost
Boutique hotel in Kawasaki-shi
A hotel full of Japanese culture and character
May 2 – 30
$1,043 per month
4.85 out of 5 average rating, 60 reviews
Boutique hotel in Shibuya City
Brooklyn Style Hotel Standard Apartment Shibuya D Instagram & Birthday Anniversary
Sep 28 – Oct 26
$926 per month
4.67 out of 5 average rating, 6 reviews
Boutique hotel in Shibuya City
Stylish Brooklyn Style Apartment Shibuya-ku Sasazuka A Room Shinjuku Shibuya Harajuku near Instagram
May 30 – Jun 27
$955 per month
4.38 out of 5 average rating, 16 reviews
Boutique hotel in Shibuya City
The Standard Apartment Shibuya-ku Sasazuka E Room Brooklyn Style Hotel Shibuya-ku
Oct 9 – Nov 6
$1,011 per month
4.43 out of 5 average rating, 28 reviews
Boutique hotel in Shibuya City
Brooklyn Style Apartment The Standard Apartment Shibuya c Taipinsta Hotel
Oct 16 – Nov 13
$988 per month
4.45 out of 5 average rating, 11 reviews

Quick stats about boutique hotel rentals in Shinjuku City

Total rentals

50 properties

Popular amenities

Kitchen, Wifi, and Pool

Wifi availability

50 properties include access to wifi

Rentals with dedicated workspaces

30 properties have a dedicated workspace

Total number of reviews

3.3K reviews

Nightly prices starting at

$60 before taxes and fees

Destinations to explore